Taxonomical and functional diversity dynamics of conspicuous echinoderms in the northeastern tropical Pacific over a decade.

Understanding what determines spatio-temporal changes in echinoderm assemblages from an integrative perspective that considers biodiversity, species evenness, and species' niches could permit superior community-scale characterizations of habitat resilience to disturbance. Such an approach was taken herein by tracking a Central Mexican Pacific echinoderm assemblage between 2012 and 2021, and higher richness, diversity, evenness, and functional entity counts were associated with more heterogeneous benthic assemblages. Echinoderm taxonomic composition was influenced by ENSO events, with higher functional diversity found during La Niña events. Conservation strategies should focus on species with unique functional traits to maintain the balance of coral community functionality.

Spatio-temporal variation in the growth of coral fragments of opportunity in the Eastern Tropical Pacific: implications for coral reef restoration

Introduction: Coral-reef communities are considered one of the most biodiverse, but also most threatened, marine ecosystems, and the accelerating loss of habitat over the past decades warrants active intervention. Objective: The present study demonstrates the successful implementation of a low-impact restoration technique in three Central Mexican Pacific degraded coral communities, using a protocol based on natural fragmentation (''fragments of opportunity") of the branching coral Pocillopora spp., considered the most abundant and primary carbonate-producing coral species of the Eastern Tropical Pacific. Methods: The restoration program was implemented in two offshore and one inshore coraline areas. The relationships between seawater temperature and coral survival, growth, and attachment rate were assessed over one year, with 183 fragments monitored each month. Results: The mean coral growth rate was 3.3 ± 0.1 mm mo-1, with annual growth rates in length and width of 39.9 ± 14.2 and 36.5 ± 19.5 mm yr-1, respectively. Self-attachment efficiency was 78 % and the survival rate was high (84 %). The growth rate differed significantly among reefs. Conclusions: Upon monitoring directly fragmented corals over a year, growth rates were deemed high enough to merit active restoration in the region. However, our data show that structural and abiotic differences and seasonal variability must be considered overall in successful long-term coral community restoration initiatives in the eastern Pacific region.

Introducción: Las comunidades de arrecifes de coral se consideran uno de los ecosistemas marinos con mayor biodiversidad, pero también los más amenazados, y la pérdida acelerada de hábitat en las últimas décadas justifica la implementación de una intervención activa. Objetivo: El presente estudio demuestra la implementación exitosa de una técnica de restauración de bajo impacto basada en la fragmentación natural (''fragmentos de oportunidad") del coral ramificado Pocillopora spp., la cual es la especie coralina más abundante y principal productora de carbonato del Pacífico Oriental Tropical. Métodos: El programa de restauración se implementó en dos sitios lejos de la costa y un sitio cercano a la costa, con comunidades coralinas degradadas. Las relaciones entre la temperatura del agua de mar y la supervivencia, el crecimiento y la tasa de adhesión de los corales se evaluaron durante un año con 183 fragmentos monitoreados cada mes. Resultados: La tasa media de crecimiento coralino fue de 3.3 ± 0.1 mm mo-1, con tasas de crecimiento anual en largo y ancho de 39.9 ± 14.2 y 36.5 ± 19.5 mm año-1, respectivamente. La eficiencia de la auto-adherencia fue del 78 % y la tasa de supervivencia fue alta (84 %). La tasa de crecimiento difirió significativamente entre los arrecifes. Conclusiones: Al monitorear directamente los corales fragmentados durante un año, las tasas de crecimiento se consideraron lo suficientemente altas como para merecer una restauración activa en la región. Sin embargo, nuestros datos muestran que las diferencias estructurales y abióticas y la variabilidad estacional deben considerarse en general en las iniciativas exitosas de restauración de comunidades de coral a largo plazo en la región del Pacífico oriental.

Evaluación de los indicadores demográficos de Pocillopora (Scleractinia: Pocilloporidae) en sitios insulares vs. costeros: implicaciones para un programa de restauración regional

Introducción: El mantenimiento de las comunidades coralinas depende directamente de la capacidad de los individuos para crecer como colonia. Dado que el crecimiento forma la base de la estructura física del arrecife, determinar la tasa de crecimiento de las especies de corales constructores y su respuesta a las variaciones ambientales nos permitirá identificar su potencial particular para implementar estrategias de restauración más efectivas. Objetivo: Determinar la tasa de crecimiento del coral constructor de arrecifes Pocillopora en todo el Pacífico Central Mexicano (PCM) y su relación con las fluctuaciones en las condiciones ambientales. Métodos: De agosto de 2019 a octubre de 2020, se monitorearon y trasplantaron un total de 153 fragmentos de coral ramificado del género Pocillopora como parte del programa de restauración en diferentes sitios de la PCM: Parque Nacional Islas Marietas y en la Caleta de Cuastecomates. Se calculó el crecimiento del coral (cm·año-1) y sobrevivencia (%), y se correlacionó con la temperatura, PAR y Kd490 para cada localidad. Resultados: Patrones similares en los parámetros examinados entre los fragmentos de coral fueron encontrados para todos los sitios, con un rango de sobrevivencia de 61.6 - 68 %, cuya mortalidad estuvo relacionada principalmente con huracanes y tormentas que afectaron la región. Sin embargo, la tasa de crecimiento oscila entre 2.0 - 8.0 cm·año-1, sin diferencias significativas entre localidades. Además, no se registraron diferencias en las condiciones ambientales entre las localidades. Conclusiones: Los corales ramificados del género Pocillopora presentan una tasa de crecimiento similar en sitios insulares y costeros de la PCM, por lo que se podría esperar que la implementación de un programa de restauración en toda esta región del Pacífico Mexicano sería potencialmente exitoso, ya que, las condiciones ambientales locales no son factores limitantes.

Introduction: The maintenance of the coral communities depends directly on the capacity of the individuals to grow as a whole colony. Since growth shapes the basis of the physical structure of the reef, determining the growth rate of builder coral-species and their response to environmental variations will allow us to identify their particular potential to implement more effective restoration strategies. Objective: To determine the growth rate of the reef-building coral Pocillopora throughout the Mexican Central Pacific (PCM) and its relationship with fluctuations in environmental conditions. Methods: From August 2019 - October 2020, a total of 153 branched coral fragments of the genus Pocillopora were monitored and transplanted as part of the restoration program in different PCM locations: Islas Marietas National Park and in the Caleta de Cuastecomates. Coral growth (cm·year-1) and survival rate (%), was calculated and correlated with temperature, PAR and Kd490 for each locality. Results: The results show similar patterns in the parameters examined among the coral fragments were found for all sites, with a survival range of 61.6 - 68 %, whose mortality was mainly related to hurricanes and storms that affected the region. However, growth rate range from 2.0 - 8.0 cm·year-1, with no significant differences between locations. Also, no differences in environmental conditions between locations were recorded. Conclusions: The branching corals of the genus Pocillopora present a similar growth rate in insular and coastal sites of the PCM, so it could be expected that the implementation of a restoration program throughout this region of the Mexican Pacific would be potentially successful, since local environmental conditions are not limiting factors.

Testing the effectiveness of natural and artificial substrates for coral reef restoration at Isla Isabel National Park, Mexico

Introduction: The branching coral Pocillopora is the main reef-building species in the Eastern Tropical Pacific (ETP) region. However, their populations have been threatened due to the intense effect of thermal-stress events in the last three decades. As a mitigating response, active restoration strategies have been developed. However, it has not been possible to establish specific protocols along the ETP's reefs. Objective: To evaluate the efficiency of two different substrates (natural vs. artificial), through coral growth comparison (extension rate and tissue area) in three Pocillopora coral morphospecies within a year. Methods: Coral growth was estimated by two techniques: extension rate and tissue area of P. cf. verrucosa, P. cf. capitata, and P. cf. damicornis every three months during a year. Results: The extension rate and superficial area growth vary among the coral morphospecies P. cf. verrucosa (16.33 mm yr-1 and 168.49 mm2 yr-1), P. cf. capitata (16.25 mm yr-1 and 176.83 mm2 yr-1), and P. cf. damicornis (12.38 mm yr-1 and 87.62 mm2 yr-1). The data reveals that substrate type did not affect Pocillopora growth, yet there was an effect caused by seasonal changes. Conclusions: This study demonstrates that coral restoration can be implemented using both natural and artificial substrata, with no differences in coral growth. We recommend the implementation of coral reef restoration programs, highlighting the importance of initiate during the warm season due to optimal growth performance of P. cf. verrucosa and P. cf capitata species, which improves the effectiveness of management actions in Isla Isabel National Park.

Introducción: Los corales ramificados del género Pocillopora son los constructores arrecifales más importantes del Pacífico Tropical Oriental (PTO). Sin embargo, sus poblaciones han disminuido por efectos de eventos de estrés térmico ocurridos las últimas décadas. Por ello, se han desarrollado estrategias de restauración activa como respuesta de mitigación, pero no ha sido posible establecer protocolos específicos para estas especies en el PTO. Objetivo: Evaluar la eficiencia de dos tipos de sustrato (natural vs. artificial) con base en la comparación del crecimiento de coral (tasa de extensión y área de tejido) en tres morfoespecies de Pocillopora a lo largo de un año. Métodos: Las estimaciones del crecimiento coralino se hicieron con dos técnicas (extensión lineal y área superficial) en P. cf. verrucosa, P. cf. capitata and P.cf. damicornis cada tres meses durante un año. Resultados: Las tasa de extensión y crecimiento del área superficial variaron entre las morfoespecies de P. cf. verrucosa (16.33 mm año-1 y 168.49 mm2 año-1), P. cf. capitata (16.25 mm año -1 y 176.83 mm2 año-1), y P.cf. damicornis (12.38 mm año-1 y 87.62 mm2 año-1). Los resultados mostraron que los tipos de sustratos no afectaron el crecimiento de los corales Pocillopora, aunque existió un efecto causado por el cambio de la estación climática, donde la estación cálida promueve un incremento su crecimiento. Conclusiones: Este estudio demuestra que la restauración de corales puede ser implementada con sustrato artificial o natural, sin diferencias en el crecimiento de corales entre ellos. Nosotros recomendamos continuar con la implementación de los programas de restauración de arrecifes de coral, resaltando, la importancia de iniciarlos en la estación cálida cuando existe un desempeño más óptimo en el crecimiento, particularmente de las especies P. cf. verrucosa y P. cf. capitata, lo cual ayudará a mejorar la efectividad de las acciones de manejo en el Parque Nacional Isla Isabel.

Palabras clave: Isla Isabel; coral hermatípico; Pacífico Central Mexicano Central; restauración arrecifal.

Active restoration efforts in the Central Mexican Pacific as a strategy for coral reef recovery

Introduction: The 1997-98 El Niño event caused massive coral bleaching and mortality in the Central Mexican Pacific (CMP). Punta de Mita alone used to harbor more than 30 % of the coral coverage in this region, with a mono-specific Pocillopora coverage. The 1997-1998 ENSO event caused massive coral mortality reducing live coral coverage to < 5 %. Despite being considered a coral region unlikely to recover, recent restoration efforts have been implemented to rehabilitate the coral community. Objective: To assess coral recovery by analyzing the coral growth and survival rates of branching Pocillopora species at Punta de Mita. Methods: Healthy coral fragments of opportunity were re-attached to the natural substrata using zip ties and measured considering their growth in terms of maximum length and width (cm) to determine their annual extension rates. Results: After 50 weeks, corals duplicated their size, with a mean growth of ~ 4 cm year-1. After 100 weeks (2 years), corals triplicated their size, increasing on average 8-9 cm in each diameter. Conclusions: Successful coral reef restoration activities in the Central Mexican Pacific are the result of Pocillopora's physiological processes, such as fast growth rates, and recent life-history traits, like the ability to cope with thermal anomalies, which enable them to thrive in a dynamic region severely affected by natural and anthropogenic perturbations. Indeed, a region considered unlikely to recover has regained its live coral cover from < 5 % in 1998 up to 15 % in 20 years. This demonstrates the importance of assisting natural coral recovery with restoration efforts, especially in coral locations that, despite environmental perturbations, have proven to be resilient and may become coral refugia areas under the current climate change scenario.

Introducción: El evento El Niño de 1997-98 causó un blanqueamiento y mortalidad masiva de corales en el Pacífico Central Mexicano (CMP). Solo Punta de Mita albergaba más del 30 % de la cobertura coralina de esta región, con una cobertura monoespecífica de Pocillopora. El evento ENSO de 1997-1998 causó una mortalidad masiva de corales que redujo la cobertura de corales vivos a < 5 %. A pesar de ser considerada una región de coral con pocas probabilidades de recuperarse, se han implementado esfuerzos de restauración recientes para rehabilitar la comunidad coralina. Objetivo: Evaluar la recuperación de coral analizando el crecimiento coralino y las tasas de supervivencia de especies ramificadas de Pocillopora en Punta de Mita. Métodos: Fragmentos de oportunidad de coral sanos se volvieron a unir a los sustratos naturales usando bridas y se midieron considerando su crecimiento en términos de longitud y ancho máximos (cm) para determinar sus tasas de extensión anual. Resultados : Después de 50 semanas, los corales duplicaron su tamaño, con un crecimiento promedio de ~ 4 cm año-1. Después de 100 semanas (2 años), los corales triplicaron su tamaño, aumentando en promedio 8-9 cm en cada diámetro. Conclusiones: Las actividades exitosas de restauración de arrecifes de coral en el Pacífico Central Mexicano son el resultado de los procesos fisiológicos de Pocillopora, tales como tasas de crecimiento rápido, y rasgos de historia de vida reciente, como la capacidad de hacer frente a anomalías térmicas, que les permiten prosperar en una región dinámica severamente afectada por perturbaciones naturales y antropogénicas. De hecho, esta región que se consideraba poco probable que se recuperara, ha recuperado su cobertura de coral vivo de < 5 % en 1998 hasta 15 % en 20 años. Esto demuestra la importancia de ayudar a la recuperación natural de los corales con los esfuerzos de restauración, especialmente en las ubicaciones de corales que, a pesar de las perturbaciones ambientales, han demostrado ser resistentes y pueden convertirse en áreas de refugio de corales ante el escenario actual de cambio climático.

Internal ultrastructure of the planktonic larva of the coral Porites panamensis (Anthozoa: Scleractinia) / Ultraestructura interna de la larva planctónica del coral Porites panamensis (Anthozoa: Scleractinia)

Abstract Introduction: The scleractinian coral life cycle includes planktonic larvae that settle on the benthos, allowing the primary polyp to clone and build a sexually reproducing adult colony. The larval physiology and ecology of Eastern Tropical Pacific scleractinians needs the exploration of basic aspects such as the internal morphology of planulae. Objective: To describe histological and cytological characteristics of Porites panamensis larvae. Methods: During August-July 2019, at Islas Marias Biosphere Reserve, Central Mexican Pacific, we made 14 collections of coral larvae and identified the species with cytochrome oxidase subunit 1 gene. We used a scanning electron microscope and other techniques. Results: The ectoderm was composed by heterogeneous, mono-ciliated, columnar epithelial cells. Nematocysts were clustered at the oral pole of the ectoderm, and cells were evident in the aboral pole of the ectoderm gland. The endoderm had secretory cells, lipids and symbionts. Conclusions: The abundance of secretory cells and nematocysts in the aboral pole suggests their importance in substrate exploration and larval settlement. Our results support previous descriptions of larval ultrastructure in other coral species.

Resumen Introducción: El ciclo de vida del coral escleractinio incluye larvas planctónicas que se asientan en el bentos, lo que permite que el pólipo primario se clone y construya una colonia de adultos con reproducción sexual. La fisiología y ecología larvaria de los escleractinios del Pacífico Tropical Oriental necesita la exploración de aspectos básicos como la morfología interna de las plánulas. Objetivo: Describir las características histológicas y citológicas de las larvas de Porites panamensis. Métodos: Durante agosto-julio 2019, en la Reserva de la Biosfera Islas Marías, Pacífico Central Mexicano, realizamos 14 recolectas de larvas de coral e identificamos las especies con el gen citocromo oxidasa subunidad 1. Utilizamos un microscopio electrónico de barrido y otras técnicas. Resultados: El ectodermo está compuesto por células epiteliales columnares heterogéneas, monociliadas. Los nematocistos se agrupan en el polo oral del ectodermo, mientras que en el polo aboral son visibles células glandulares. El endodermo presentó células secretoras, lípidos y simbiontes. Conclusiones: La abundancia de células secretoras y nematocistos en el polo aboral sugiere su importancia en la exploración del sustrato y asentamiento larvario. Nuestros resultados respaldan las descripciones previas de la ultraestructura de las larvas en otras especies de coral.

Coral calcification and carbonate production in the eastern tropical Pacific: The role of branching and massive corals in the reef maintenance.

Hermatypic corals have the potential to construct calcium carbonate (CaCO3 ) reef-framework, maintain habitats tridimensionality and contribute to both the biogeochemical and the geo-ecological functionality of coral reefs. However, in the past decades, coral reef growth capacity has been affected by multiple and cumulative anthropogenic stressors, threating the reef functionality and their ecosystem goods and services provision to humankind. This study evaluated temporal changes in geobiological growth characteristics as a function of live coral cover, calcification rate (extension rate and skeletal density) and coral carbonate production at Islas Marias archipelago from the eastern tropical Pacific, using historical data obtained in 2007 (López-Pérez et al., 2015, Marine Ecology, 37, 679) and data obtained through field and laboratory research between 2015 and 2018. Overall, live coral cover decreased (82%), where Pocillopora spp. corals reduced from 26% in 2007 to 4% in 2018, in contrast, Pavona spp. declined from 4.1% to 3.7% over the same period. Coral carbonate production ranged between 1.78 and 10.65 kg CaCO3  m-2  yr-1 , with a significant difference (threefold) between reef zones (shallow vs deep), highlighting the higher carbonate production at deep-reef sites. Coral cover, carbonate production and sclerocronological characteristics showed a decrease rate (between 30 and 60%) associated with thermal anomaly events such as La Niña (2010-2011) and El Niño (2014-2016), with positive sights of recovery (twofold) during the following years 2017-2018. This study provides evidence that massive Pavona and branching Pocillopora corals are key reef-building species at Islas Marias archipelago, due to their capability of sustaining live coral coverage and carbonate through thermal disturbance periods. Revealing, that corals at mid-water depths (>10 m) may significantly contribute to the long-term stability of biogenic reef-framework, and geo-ecological functionality of the eastern tropical Pacific reefs.

Echinoderms (Echinodermata) from the Central Mexican Pacific

Introduction: The echinoderms from the Central Mexican Pacific are of high scientific interest and, prior to this present work, there was a lack of basic information that included incomplete checklists with inconsistencies in systematics and spatial distribution. Objective: To provide a historical review, and an updated checklist with a more complete richness of echinoderms for each state and island of the region. Methods: A checklist was elaborated based on an exhaustive literature search of the Echinodermata, and was complemented with taxonomical revisions of Ophiuroidea scientific collections. All the geographical coordinates of the records were validated. Results: The region harbors 187 species of Echinodermata: three Crinoidea, 35 Asteroidea, 67 Ophiuroidea, 32 Echinoidea, and 50 Holothuroidea. We detected 52 records in the literature that must be considered as invalid and five as doubtful. We provide 16 new records of Ophiuroidea from different states and islands; of them, four are new records for the region. Jalisco presented the highest number of species (84), followed by the coast of Nayarit (74), Michoacán (63), and Colima (55); among the islands, Revillagigedo showed the major number of species (85) followed by Marías (81), Marietas (48), and Isabel (44). Conclusions: The numbers of species known in the region are mostly related to both sampling effort and environmental characteristics that promote high biodiversity. The Central Mexican Pacific is an oceanographic region with mixed conditions from the North and South of the Mexican Pacific, and therefore, with a biogeographical importance reflected in its species richness.

Introducción: Los equinodermos del Pacífico Central mexicano poseen un alto interés científico, pero anterior al presente trabajo existía un vacío en la información básica como listados de especies incompletos con inconsistencias sistemáticas y de distribución espacial. Objetivo: Proporcionar una revisión histórica y un listado de especies actualizado con la riqueza completa de equinodermos para cada estado e islas de la región. Métodos: Se elaboró un listado de especies basado en una búsqueda exhaustiva de Echinodermata, y fue complementada con la revisión taxonómica de Ophiuroidea de colecciones científicas. Todas las coordenadas geográficas de los registros fueron validadas. Resultados: La región posee 187 especies de Echinodermata: tres Crinoidea, 35 Asteroidea, 67 Ophiuroidea, 32 Echinoidea, y 50 Holothuroidea. Detectamos 52 registros en la literatura considerados como inválidos y cinco como dudosos. Proveemos 16 nuevos registros de Ophiuroidea para diversos estados e islas; de estos, cuatro son nuevos registros para la región. Jalisco presentó el mayor número de especies (84), seguido por las costas de Nayarit (74), Michoacán (63), y Colima (55); entre las islas, Revillagigedo presentó el mayor número de especies (85) seguido por Marías (81), Marietas (48), e Isabel (44). Conclusiones: Los números de especies de la región están mayormente relacionados tanto con el esfuerzo de muestreo como con características ambientales que promueven una alta biodiversidad. El Pacífico Central mexicano es una región oceanográfica con condiciones mixtas del norte y sur del Pacífico mexicano, y por lo tanto con una importancia biogeográfica reflejada en la riqueza de la región.

Micro-Fragmentation as an Effective and Applied Tool to Restore Remote Reefs in the Eastern Tropical Pacific.

Coral reef ecosystems are continuously degraded by anthropogenic and climate change drivers, causing a widespread decline in reef biodiversity and associated goods and services. In response, active restoration methodologies and practices have been developed globally to compensate for losses due to reef degradation. Yet, most activities employ the gardening concept that uses coral nurseries, and are centered in easily-accessible reefs, with existing infrastructure, and impractical for coral reefs in remote locations. Here we evaluate the effectiveness of direct outplanting of coral micro-fragments (Pavona clavus and Pocillopora spp.) as a novel approach to restore remote reefs in the Islas Marías archipelago in the Eastern Tropical Pacific. Coral growth (height-width-tissue cover), survival percentage, extension rates (cm year-1), skeletal density (g cm-3) and calcification rates (g cm-2 year-1) were assessed over 13 months of restoration. In spite of detrimental effects of Hurricane Willa, transplants showed a greater-than-twofold increase in all growth metrics, with ~58-61% survival rate and fast self-attachment (within ~3.9 months) for studied species, with Pocilloporids exhibiting higher extension, skeletal density, and calcification rates than Pavona. While comprehensive long-term studies are required, direct transplantation methodologies of coral micro-fragments are emerging as time-effective and affordable restoration tools to mitigate anthropogenic and climate change impacts in remote and marginal reefs.

Calcification and growth rate recovery of the reef-building Pocillopora species in the northeast tropical Pacific following an ENSO disturbance.

Pocilloporids are one of the major reef-building corals in the eastern tropical Pacific (ETP) and also the most affected by thermal stress events, mainly those associated with El Niño/Southern Oscillation (ENSO) periods. To date, coral growth parameters have been poorly reported in Pocillopora species in the northeastern region of the tropical Pacific. Monthly and annual growth rates of the three most abundant morphospecies (P. cf. verrucosa, P. cf. capitata, and P. cf. damicornis) were evaluated during two annual periods at a site on the Pacific coast of Mexico. The first annual period, 2010-2011 was considered a strong ENSO/La Niña period with cool sea surface temperatures, then followed by a non-ENSO period in 2012-2013. The linear extension rate, skeletal density, and calcification rate averaged (±SD) were 2.31 ± 0.11 cm yr-1, 1.65 ± 0.18 g cm-3, 5.03 ± 0.84 g cm-2 yr-1 respectively, during the strong ENSO event. In contrast, the respective non-ENSO values were 3.50 ± 0.64 cm yr-1, 1.70 ± 0.18 g cm-3, and 6.02 ± 1.36 g cm-2 yr-1. This corresponds to 52% and 20% faster linear extension and calcification rates, respectively, during non-ENSO period. The evidence suggests that Pocillopora branching species responded positively with faster growth rates following thermal anomalies, which allow them to maintain coral communities in the region.

Correction: Coral Reef Health Indices versus the Biological, Ecological and Functional Diversity of Fish and Coral Assemblages in the Caribbean Sea.

[This corrects the article DOI: 10.1371/journal.pone.0161812.].

Coral Reef Health Indices versus the Biological, Ecological and Functional Diversity of Fish and Coral Assemblages in the Caribbean Sea.

This study evaluated the relationship between the indices known as the Reef Health Index (RHI) and two-dimensional Coral Health Index (2D-CHI) and different representative metrics of biological, ecological and functional diversity of fish and corals in 101 reef sites located across seven zones in the western Caribbean Sea. Species richness and average taxonomic distinctness were used to asses biological estimation; while ecological diversity was evaluated with the indices of Shannon diversity and Pielou´s evenness, as well as by taxonomic diversity and distinctness. Functional diversity considered the number of functional groups, the Shannon diversity and the functional Pielou´s evenness. According to the RHI, 57.15% of the zones were classified as presenting a "poor" health grade, while 42.85% were in "critical" grade. Based on the 2D-CHI, 28.5% of the zones were in "degraded" condition and 71.5% were "very degraded". Differences in fish and coral diversity among sites and zones were demonstrated using permutational ANOVAs. Differences between the two health indices (RHI and 2D-CHI) and some indices of biological, ecological and functional diversity of fish and corals were observed; however, only the RHI showed a correlation between the health grades and the species and functional group richness of fish at the scale of sites, and with the species and functional group richness and Shannon diversity of the fish assemblages at the scale of zones. None of the health indices were related to the metrics analyzed for the coral diversity. In general, our study suggests that the estimation of health indices should be complemented with classic community indices, or should at least include diversity indices of fish and corals, in order to improve the accuracy of the estimated health status of coral reefs in the western Caribbean Sea.

Testing the genetic predictions of a biogeographical model in a dominant endemic Eastern Pacific coral (Porites panamensis) using a genetic seascape approach.

The coral fauna of the Eastern Tropical Pacific (ETP) is depauperate and peripheral; hence, it has drawn attention to the factors allowing its survival. Here, we use a genetic seascape approach and ecological niche modeling to unravel the environmental factors correlating with the genetic variation of Porites panamensis, a hermatypic coral endemic to the ETP. Specifically, we test if levels of diversity and connectivity are higher among abundant than among depauperate populations, as expected by a geographically relaxed version of the Abundant Center Hypothesis (rel-ACH). Unlike the original ACH, referring to a geographical center of distribution of maximal abundance, the rel-ACH refers only to a center of maximum abundance, irrespective of its geographic position. The patterns of relative abundance of P. panamensis in the Mexican Pacific revealed that northern populations from Baja California represent its center of abundance; and southern depauperate populations along the continental margin are peripheral relative to it. Genetic patterns of diversity and structure of nuclear DNA sequences (ribosomal DNA and a single copy open reading frame) and five alloenzymatic loci partially agreed with rel-ACH predictions. We found higher diversity levels in peninsular populations and significant differentiation between peninsular and continental colonies. In addition, continental populations showed higher levels of differentiation and lower connectivity than peninsular populations in the absence of isolation by distance in each region. Some discrepancies with model expectations may relate to the influence of significant habitat discontinuities in the face of limited dispersal potential. Environmental data analyses and niche modeling allowed us to identify temperature, water clarity, and substrate availability as the main factors correlating with patterns of abundance, genetic diversity, and structure, which may hold the key to the survival of P. panamensis in the face of widespread environmental degradation.

[Community structure of zooxanthellate corals (Anthozoa: Scleractinia) in Carrizales coral reef, Pacific coast, Mexico]. / Estructura comunitaria de corales zooxantelados (Anthozoa: Scleractinia) en el arrecife coralino de Carrizales, Pacifico Mexicano.

Coral reefs in the Mexican Pacific and notably those of the continental coastline of Colima state are still poorly studied. Fortunately, recent efforts have been carried out by researchers from different Mexican institutions to fill up these information gaps. The aim of this study was to determine the ecological structure of the rich and undisturbed coral building communities of Carrizales by using the point transect interception method (25m-long). For this, three survey expeditions were conducted between June and October 2005 and September 2006; and for comparison purposes, the reef was subdivided according to its position in the bay, and depth (0 to 5 m, and 6 to 10 m). Thirteen coral species were observed in the area, with Pocillopora verrucosa as the most abundant, contributing up to 32.8% of total cover, followed by Porites panamensis and Pocillopora capitata with 11% and 7%, respectively. Other species, Pocillopora damicornis, Pavona gigantea, Pocillopora eydouxi and Pocillopora inflata accounted for 1.5% to 2% of coral cover whereas the remaining five species had cover of less than 1%. Seven of the observed species represented new records for Colima state coastline: Pocillopora eydouxi, P inflata, P meandrina, Pavona duerdeni, P varians, Psammocora stellata and P contigua. This last species is a relevant record, because it has never been observed before in the Eastern Pacific. Although there was no significant difference (ANOVA, p = 0.478) neither in the abundance between the sides of the bay, nor between the depths considered, and the shallow zone observed the higher coral cover. Live coral cover was up to 61%, one of the highest ever reported for the Mexican Pacific, including the Gulf of California. The observed values of diversity (H' = 0.44 +/- 0.02), uniformity (J' = 0.76 +/- 0.02), and taxonomic distinctness index (delta* = 45.87 +/- 3.16), showed that currently this is the most important coral reef of Colima coastline. Currently, this region does not show any disturbance effects, but the increasing economic development of Manzanillo, as one of the main commercial ports of Mexico, its proximity to the reef, and the burgeoning number of tourists, may have some ecosystem impacts, for which management and conservation plans for Colima coastline are highly recommended.

Estructura comunitaria de corales zooxantelados (Anthozoa: Scleractinia) en el arrecife coralino de Carrizales, Pacífico Mexicano / Community structure of zooxanthellate corals (Anthozoa: Scleractinia) in Carrizales coral reef, Pacific coast, Mexico

Coral reefs in the Mexican Pacific and notably those of the continental coastline of Colima state are still poorly studied. Fortunately, recent efforts have been carried out by researchers from different Mexican institutions to fill up these information gaps. The aim of this study was to determine the ecological structure of the rich and undisturbed coral building communities of Carrizales by using the point transect interception method (25m-long). For this, three survey expeditions were conducted between June and October 2005 and September 2006; and for comparison purposes, the reef was subdivided according to its position in the bay, and depth (0 to 5m, and 6 to 10m). Thirteen coral species were observed in the area, with Pocillopora verrucosa as the most abundant, contributing up to 32.8% of total cover, followed by Porites panamensis and Pocillopora capitata with 11% and 7%, respectively. Other species, Pocillopora damicornis, Pavona gigantea, Pocillopora eydouxi and Pocillopora inflata accounted for 1.5% to 2% of coral cover whereas the remaining five species had cover of less than 1%. Seven of the observed species represented new records for Colima state coast- line: Pocillopora eydouxi, P. inflata, P. meandrina, Pavona duerdeni, P. varians, Psammocora stellata and P. contigua. This last species is a relevant record, because it has never been observed before in the Eastern Pacific. Although there was no significant difference (ANOVA, p=0.478) neither in the abundance between the sides of the bay, nor between the depths considered, and the shallow zone observed the higher coral cover. Live coral cover was up to 61%, one of the highest ever reported for the Mexican Pacific, including the Gulf of California. The observed values of diversity (H´=0.44±0.02), uniformity (J´=0.76±0.02), and taxonomic distinctness index (Δ*=45.87±3.16), showed that currently this is the most important coral reef of Colima coastline. Currently, this region does not show any disturbance effects, but the increasing economic development of Manzanillo, as one of the main commercial ports of Mexico, its proximity to the reef, and the burgeoning number of tourists, may have some ecosystem impacts, for which management and conservation plans for Colima coastline are highly recommended.

El conocimiento ecológico de corales arrecifales en el Pacífico mexicano es escaso, por lo que el objetivo de este trabajo fue determinar la estructura de la comunidad de corales hermatípicos en el arrecife de Carrizales, Colima, mediante el uso de transectos y buceo autónomo (junio y octubre 2005, septiembre 2006). De las 13 especies de corales encontradas, Pocillopora verrucosa fue la más abundante y siete representan nuevos registros, sobresaliendo Psammocora contigua, primer registro para el Pacífico Oriental. No hubo diferencias significativas de abundancia entre profundidades, pero la zona somera presenta una mayor cobertura. Este sitio presenta una de las riquezas y cobertura de coral más alta (61%) en el Pacífico Mexicano y valores de diversidad (H´=0.44±0.02), uniformidad (J´=0.76±0.02), y de diferenciación taxonómica (Δ*=45.87±3.16) relativamente altos. Actualmente la región no presenta grandes perturbaciones pero el creciente desarrollo económico de Manzanillo, uno de los principales puertos comerciales del país, además del creciente número de turistas, podrían afectar al arrecife, por lo que se sugiere implementar medidas de protección con el fin de mantener al arrecife más importante del litoral de Colima.

Global human footprint on the linkage between biodiversity and ecosystem functioning in reef fishes.

Difficulties in scaling up theoretical and experimental results have raised controversy over the consequences of biodiversity loss for the functioning of natural ecosystems. Using a global survey of reef fish assemblages, we show that in contrast to previous theoretical and experimental studies, ecosystem functioning (as measured by standing biomass) scales in a non-saturating manner with biodiversity (as measured by species and functional richness) in this ecosystem. Our field study also shows a significant and negative interaction between human population density and biodiversity on ecosystem functioning (i.e., for the same human density there were larger reductions in standing biomass at more diverse reefs). Human effects were found to be related to fishing, coastal development, and land use stressors, and currently affect over 75% of the world's coral reefs. Our results indicate that the consequences of biodiversity loss in coral reefs have been considerably underestimated based on existing knowledge and that reef fish assemblages, particularly the most diverse, are greatly vulnerable to the expansion and intensity of anthropogenic stressors in coastal areas.

Host-symbiont recombination versus natural selection in the response of coral-dinoflagellate symbioses to environmental disturbance.

Mutualisms between reef-building corals and endosymbiotic dinoflagellates are particularly sensitive to environmental stress, yet the ecosystems they construct have endured major oscillations in global climate. During the winter of 2008, an extreme cold-water event occurred in the Gulf of California that bleached corals in the genus Pocillopora harbouring a thermally 'sensitive' symbiont, designated Symbiodinium C1b-c, while colonies possessing Symbiodinium D1 were mostly unaffected. Certain bleached colonies recovered quickly while others suffered partial or complete mortality. In most colonies, no appreciable change was observed in the identity of the original symbiont, indicating that these partnerships are stable. During the initial phases of recovery, a third species of symbiont B1(Aiptasia), genetically identical to that harboured by the invasive anemone, Aiptasia sp., grew opportunistically and was visible as light-yellow patches on the branch tips of several colonies. However, this symbiont did not persist and was displaced in all cases by C1b-c several months later. Colonies with D1 were abundant at inshore habitats along the continental eastern Pacific, where seasonal turbidity is high relative to offshore islands. Environmental conditions of the central and southern coasts of Mexico were not sufficient to explain the exclusivity of D1 Pocillopora in these regions. It is possible that mass mortalities associated with major thermal disturbances during the 1997-1998 El Niño Southern Oscillation eliminated C1b-c holobionts from these locations. The differential loss of Pocillopora holobionts in response to thermal stress suggests that natural selection on existing variation can cause rapid and significant shifts in the frequency of particular coral-algal partnerships. However, coral populations may take decades to recover following episodes of severe selection, thereby raising considerable uncertainty about the long-term viability of these communities.